Jerome

publications

 
 

pdf

Frankel, E.B., Tiroumalechetty, A., Su, Z., Henry, P.S., Mueller, B.D., Jorgensen, E.M., Wu, Y., and Kurshan, P.T. (2025). Intracellular protein-lipid interactions drive presynaptic assembly prior to neurexin recruitment. Neuron 113, 737-753.e6.

pdf

Phan, J., Silva, M., Kohlmeyer, R., Ruethemann, R., Gay, L., Jorgensen, E., and Babst, M. (2025). Recovery of plasma membrane tension after a hyperosmotic shock. Mol Biol Cell 36, ar45.

pdf

Davis, M.W., and Jorgensen, E.M. (2025). Using ApE for In Silico Golden Gate Cloning. In Golden Gate Cloning: Methods and Protocols, D. Schindler, ed. (Springer US), pp. 79–87.

Mueller, BD, Merrill SA, von Diezmann L, Jorgensen EM. Using Localization Microscopy to Quantify Calcium Channels at Presynaptic Boutons. Bio-protocol 2024 14(16): e5049. DOI: 10.21769/BioProtoc.5049.

pdf
pdf

Koopman, M., Güngördü, L., Janssen, L., Seinstra, R.I., Richmond, J.E., Okerlund, N., Wardenaar, R., Islam, P., Hogewerf, W., Brown, A.E.X., et al. (2024). Rebalancing the motor circuit restores movement in a Caenorhabditis elegans model for TDP-43 toxicity. Cell Rep 43, 114204.

pdf

Fernando, S.I., Martineau, J.T., Hobson, R.J., Vu, T.N., Baker, B., Mueller, B.D., Menon, R., Jorgensen, E.M., and Gerton, J.M. Simultaneous spectral differentiation of multiple fluorophores in super-resolution imaging using a glass phase plate. Opt. Express, 2023, OE 31, 33565–33581. https://doi.org/10.1364/OE.499929.

PDF

Palfreyman MT, West SE, Jorgensen EM. SNARE Proteins in Synaptic Vesicle Fusion. Adv Neurobiol. 2023;33:63-118. doi: 10.1007/978-3-031-34229-5_4. PMID: 37615864.

Mueller BD, Merrill SA, Watanabe S, Liu P, Niu L, Singh A, Maldonado-Catala P, Cherry A, Rich MS, Silva M, Maricq AV, Wang ZW, Jorgensen EM. CaV1 and CaV2 calcium channels mediate the release of distinct pools of synaptic vesicles. Elife. 2023 Feb 23;12:e81407. doi: 10.7554/eLife.81407. PMID: 36820519.

PDF
PDF

Parra-Rivas LA, Palfreyman MT, Vu TN, Jorgensen EM. Interspecies complementation identifies a pathway to assemble SNAREs. iScience. 2022 Jun 2;25(7):104506. doi: 10.1016/j.isci.2022.104506. PMID: 35754735; PMCID: PMC9213704.

PDF

Davis MW, Jorgensen EM. ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program. Front Bioinform. 2022 Feb 4;2:818619. doi: 10.3389/fbinf.2022.818619. PMID: 36304290; PMCID: PMC9580900.

PDF

Guo R, Nelson S, Regier M, Davis MW, Jorgensen EM, Shepherd J, Menon R. Scan-less machine-learning-enabled incoherent microscopy for minimally-invasive deep-brain imaging. Opt Express. 2022 Jan 17;30(2):1546-1554. doi: 10.1364/OE.446241. PMID: 35209312; PMCID: PMC8970698.

PDF

Rich MS, Nix P, Jorgensen EM. The C. elegans mapping locus rol-9 is encoded by a gain-of-function mutation in mlt-11. MicroPubl Biol. 2022 Jan 5;2022:10.17912/micropub.biology.000506. doi: 10.17912/micropub.biology.000506. PMID: 35005481; PMCID: PMC8733821.

Schwartz ML, Davis MW, Rich MS, Jorgensen EM (2021) High-efficiency CRISPR gene editing in C. elegans using Cas9 integrated into the genome. PLoS Genet 17(11): e1009755. https://doi.org/10.1371/journal.pgen.1009755

Protocol
PDF
PDF

Xiao T, Yan A, Huang JD, Jorgensen EM, Shah NP. Comparative Peptidomic and Metatranscriptomic Analyses Reveal Improved Gamma-Amino Butyric Acid Production Machinery in Levilactobacillus brevis Strain NPS-QW 145 Cocultured with Streptococcus thermophilus Strain ASCC1275 during Milk Fermentation. Appl Environ Microbiol. 2020 Dec 17;87(1):e01985-20. doi: 10.1128/AEM.01985-20. PMID: 33067198; PMCID: PMC7755244.

Watanabe, S., Davis, M.W., Kusick, G.F., Iwasa, J., and Jorgensen, E.M. (2020). SynapsEM: Computer-Assisted Synapse Morphometry. Frontiers in Synaptic Neuroscience 12, 55.

PDF
pdf

Kusick, G.F., Chin, M., Raychaudhuri, S., Lippmann, K., Adula, K.P., Hujber, E.J., Vu, T., Davis, M.W., Jorgensen, E.M., and Watanabe, S. 2020. Synaptic vesicles transiently dock to refill release sites. Nature Neuroscience 1–10.

PDF

 LaBella M.L., Hujber E.J., Moore K.A., Rawson R.L., Merrill S.A., Allaire P.D., Ailion M., Hollien J., Bastiani M.J., Jorgensen E.M. 2020. Casein Kinase 1δ Stabilizes Mature Axons by Inhibiting Transcription Termination of Ankyrin. Developmental Cell. 52(1):88-103.e6.

pdf

Appadurai, D., Gay, L., Moharir, A., Lang, M.J., Duncan, M.C., Schmidt, O., Teis, D., Vu, T.N., Silva, M., Jorgensen, E.M., et al. 2019. Plasma membrane tension regulates eisosome structure and function. MBoC 31, 287–303.

PDF

Watanabe, S., L.E. Mamer, S. Raychaudhuri, J. Eisen, T. Trimbuch, B. Söhl-Kielczynski, P. Fenske, I. Milosevic, C. Rosenmund, E.M. Jorgensen. 2018. Synaptojanin and Endophilin Mediate Neck Formation during Ultrafast Endocytosis. Neuron, 98:1184-1187.

Chen, B., P. Liu, E. J. Hujber, Y. Li, E.M. Jorgensen, Z.W. Wang. 2017. AIP limits neurotransmitter release by inhibiting calcium bursts from the ryanodine receptor, Nature Communications, 8:1380.

PDF

Palfreyman, M.P., E. M. Jorgensen. 2017. Unc13 Aligns SNAREs and Superprimes Synaptic Vesicles. Neuron 85:473-475.

PDF

Topalidou, I., P.A. Chen, K. Cooper, S. Watanabe, E.M. Jorgensen, M. Ailion. 2017. The NCA-1 and NCA-2 Ion Channels Function Downstream of Gq and Rho to Regulate Locomotion in Caenorhabditis elegans. Genetics 206: 265-282.

PDF

German, C.L., Gudheti, M.V., Fleckenstein, A.E., E.M. Jorgensen. 2017. Brain Slice Staining and Preparation for Three-Dimensional Super-Resolution Microscopy. Methods Mol Biol, 1663:153-162.

PDF

Geisler, F., H. Gerhardus, K. Carberry, W. Davis, E M. Jorgensen, C. Richardson, O. Bossinger and R.E. Leube. 2016. A novel function for the MAP kinase SMA-5 in intestinal tube stability. Molecular Biology of the Cell 27, p3855-3868.

PDF

Edelman, T.L.B., K. A. McCulloch, A. Barr, C. Frøkjær-Jensen, E.M. Jorgensen and A. E. Rougvie. 2016. Analysis of a lin-42/periodn null allele implicates all three isoforms in regulation of Caenorhabditis elegans molting and developmental timing. G3 6:4077-4086.

PDF

Hess, J., M. Patra, L. Rangasamy, S. Konatschnig, O. Blacque, A. Jabbar, P. Mac, E.M. Jorgensen, R.B. Gasser, G. Gasser. 2016. Organometallic derivatization of the nematocidal drug monepantel leads to promising antiparasitic drug candidates. Chemistry 22, 16602-16612.

PDF

Bend, E.G.,Y.Si, D.A. Stevenson, P. Bayrak-Toydemir, T.M. Newcomb, E.M. Jorgensen, K.J. Swoboda. 2016, NALCN channelopathies: Distinguishing gain-of-function and loss-of-function mutations. Neurology 87, p1131-1139.

PDF

Wheeler, B.S., E. Anderson, C. Frøkjær-Jensen, Q. Bian, E.M. Jorgensen, B.J. Meyer. 2016. Chromosome-wide mechanisms to decouple gene expression from gene dose during sex-chromosome evolution. eLife 5:e17365. DOI: 10.7554/eLife.17365.

PDF

Frøkjær-Jensen, C., N. Jain, L. Hansen, M.W. Davis, Y. Li, D. Zhao, K. Rebora, J.R. Millet, X. Liu, S.K. Kim, D. Dupuy, E.M. Jorgensen*, and A.Z. Fire*. 2016. An Abundant class of non-coding DNA can prevent stochastic gene silencing in the C. elegans germline. Cell 166, p343-357. (*co-corresponding authors).

PDF

Li, P., S. Merrill, E.M. Jorgensen, and K. Shen. 2016. Two clathrin adaptor protein complexes instruct axon-dendrite polarity. Neuron 90, p564-580.

PDF

Schwartz, M.L., E.M. Jorgensen. 2016. SapTrap, a Toolkit for High-Throughput CRISPR/Cas9 Gene Modification in C. elegans. Genetics 202, p. 1277-1288. doi 10.1534/genetics.115.184275.

PDF

Alqadah, A., Y.-W. Hsieh, J.A. Schumacher, X. Wang, S.A. Merrill, G. Millington, B. Bayne, E.M. Jorgensen, C.-F. Chuang. 2016. SLO BK potassium channels couple gap junctions to inhibition of calcium signaling in olfactory neuron diversification. PLoS Genetics, 12, e1005654-e1005654.

PDF

Jobson, M.A., C.M. Valdez, J. Gardner, L.R. Garcia, E.M. Jorgensen, and A.A. Beg. 2015. Spillover transmission is regulated by the excitatory GABA receptor LGC-35 in C. elegans. J. Neurosci. 35, p2803-2816.

PDF

Watanabe, S., T. Trimbuch, M. Camacho-Pérez, B.R. Rost, B. Brokowski, B. Söhl-Kielczynski, A. Felies, M.W. Davis, C. Rosenmund, and E.M. Jorgensen. 2014. Clathrin regenerates synaptic vesicles from endosomes. Nature 515, p228-233.

PDF

Hollopeter, G.H., J.J. Lange, Y. Zhang, T.N. Vu, M. Gu, M. Ailion, E.J. Lambie, B.D. Slaughter, J.R. Unruh, L. Florens, and E.M. Jorgensen. 2014. The membrane-associated proteins FCHo and SGIP are allosteric activators of the AP2 clathrin adaptor complex. eLife 3, 03648. doi:10.7554/eLife

PDF

Jorgensen, E.M. 2014. Animal evolution: looking for the first nervous system. Current Biology 24, pR655-R658. Review.

PDF

Liu Q, Frerck MJ, Holman HA, Jorgensen EM, Rabbitt RD. 2014. Exciting cell membranes with a blustering heat shock. Biophys J. 106(8):1570–1577. PMCID: PMC4008823

PDF

Frøkjær-Jensen, C., M.W. Davis, M. Sarov, J. Taylor, S. Flibotte, M. LaBella, A. Pozniakovsky, D.G Moerman, E.M. Jorgensen. 2014. Random and targeted integration of transgenes in C. elegans using a modified Mos1 transposon. Nature Methods 11, p529-534

PDF

Ailion, M., M. Hannemann, S. Dalton, A. Pappas, S.Watanabe, J. Hegermann, H.F. Han, M. Gu, K. Schuske, P. Hullett, S. Eimer, and E.M. Jorgensen. 2014. A Rab2 Effector Complex Mediates Dense-core Vesicle Maturation. Neuron 82, p167-180.

PDF

Rawson, R.L., L. Yam, R.M. Weimer, E.G. Bend, E. Hartwieg, H.R. Horvitz, S.G. Clark, E.M. Jorgensen. 2014. Axons degenerate in the absence of mitochondria. Curr Biol 24, p760-765.

PDF

Nix, P. M. Hammarlund, L. Hauth, M. Lachnit, E.M. Jorgensen, and M. Bastiani. 2014. Axon regeneration genes identified by RNAi screening in C. elegans. J. Neurosci. 34, p629-645.

PDF

Kavalali, E., and E.M. Jorgensen. 2014. Visualizing Presynaptic Function. Nature Neuroscience 17, p10-16. Review.

PDF

Ilovitsh, T., A. Meiri, C. Ebeling, R. Menon, J.M. Gerton, E.M. Jorgensen, and Z. Zalevsky. 2013. Improved localization accuracy in stochastic super-resolution fluorescence micoscopy by K-factor Image deshadowing. Biomedical Optics Express 5, p244–258.

PDF

Watanabe, S., B. Rost., M. Camacho, M. W. Davis, B. Söhl-Kielczynski, A. Felies, C. Rosenmund and E.M. Jorgensen. 2013. Ultrafast endocytosis at mouse hippocampal synapses. Nature 504, p242-247.

PDF

Peden, A.S., P. Mac, Y.J. Fei, C. Castro, G. Jiang, K.J. Murfitt, E.A. Miska, V. Ganapathy, E.M. Jorgensen. 2013. Betaine acts on ligand-gated ion channel in the nervous system of the nematode C. elegans. Nature Neuroscience 16, 1794-1801.

PDF

Ebeling, C. and E.M. Jorgensen. 2013. Two views on light sheets. Nature Biotechnology 31, p992–993.

PDF

Watanabe, S., Q. Liu, M.W. Davis , N. Thomas, J. Richards, G. Hollopeter, M. Gu, N.B. Jorgensen and E.M. Jorgensen. 2013. Ultrafast endocytosis at the C. elegans neuromuscular junction. eLife 2, e00723.

PDF

Ritter, B., S. Murphy, M.V. Gudheti, M. Halin, J. Philie, E.M. Jorgensen, K. Gehring, and P.S. McPherson. 2013. NECAP 1 regulates AP-2 interactions to control vesicle size, number and cargo during clathrin-mediated endocytosis.PLoS Biology 11, e1001670.

PDF

Hodges, J., X. Tang, M. Landesman, J.B. Ruedas, A. Ghimire, M.V. Gudheti, J. Perrault, E.M. Jorgensen, J.M. Gerton and S. Saffarian. 2013. Asymmetric packaging of polymerases within vesicular stomatitis virus. Biochem Biophys Res Commun 440, p271-276.

PDF

Shao, Z., S. Watanabe, R. Christensen, E.M. Jorgensen and D.A. Colón-Ramos. 2013. Synapse location during growth depends on glia location. Cell 154, p337-350.

PDF

Qi, Q.B., M.D. Po, P. Mac, T. Kawano, E.M. Jorgensen, M. Zhen, Y. Jin. 2013. Hyperactivation of B-type motor neurons results in aberrant synchrony of the Caenorhabditis elegans motor circuit. J. Neurosci. 33, p5319-5325.

PDF

Gu, M., Q. Liu, S. Watanabe, L. Sun, B. Grant, and E.M. Jorgensen. 2013. AP2 hemicomplexes contribute independently to synaptic vesicle endocytosis. eLife 2, p00190

PDF

Jurrus, E.. S. Watanabe, R. J. Giuly, A. R. C. Paiva, M. Ellisman, E.M. Jorgensen, T. Tasdizen. 2013. Semi-automated neuron boundary detection and nonbranching process segmentation in electron microscopy images.Neuroinformatics 10, p1-25.

PDF

Gu, M., Q. Liu, S. Watanabe, L. Sun, G. Hollopeter, B. Grant, and E.M. Jorgensen. 2013. AP2 subunits contribute independently to synaptic vesicle endocytosis. eLife 2, 00190.

PDF

Watanabe, S., Richards, J., Hollopeter, G., Hobson, R.J., Davis, M.W., and Jorgensen, E.M. 2012. Nano-fEM: protein localization using correlative photo-activated localization microscopy and electron microscopy. Journal of Visual Experiments 3: e3995. doi: 10.3791/3995.

PDF

White, J.Q. and E.M. Jorgensen. 2012. Sensation in a single neuron pair represses male behavior in hermaphrodites. Neuron 75, p593-600.

PDF

Mullen, G.P., K.M. Grundahl, M. Gu, S. Watanabe, R.J. Hobson, J.A. Crowell, J.R. McManus, E.A. Mathews, E.M. Jorgensen, and J.B. Rand. 2012. UNC-41/Stonin functions with AP2 to recycle synaptic vesicles in Caenorhabditis elegans. PLoS ONE 7:e40095.

PDF

Jurrus, E.. S. Watanabe, R. J. Giuly, A. R. C. Paiva, M. Ellisman, E.M. Jorgensen, T. Tasdizen. 2012. Semi-automated cell boundary detection and nonbranching process segmentation in electron microscopy images. Neuroinformatics 10, p1-25.

PDF

Carberry K, Wiesenfahrt T, Geisler F, Stöcker S, Gerhardus H, Überbach D, Davis W, Jorgensen E.M., Leube RE, Bossinger O. 2012. The novel intestinal filament organizer IFO-1 contributes to epithelial integrity in concert with ERM-1 and DLG-1. Development 139, p1851-1862.

PDF

Ernstrom, G., R.M. Weimer, D. Greenstein and E.M. Jorgensen. 2012. The V-ATPase subunit B is required for synaptic vesicle acidification and locomotion in Caenorhabditis elegans. Genetics 191, p461-475.

PDF

Watanabe, S., G. Oikonomou, S. Shaham and E.M. Jorgensen. 2011. Molecular Architecture of a Sensory Ending Using Correlative Fluorescence and Electron Microscopy. Microscopy and Microanalysis 17 (Suppl. 2) , 362-363. doi:10.1017/S1431927611002686.

PDF

Frøkjær-Jensen, C., M.W. Davis, M. Ailion, E.M. Jorgensen. 2012. Improved Mos1-mediated transgenesis in C. elegans. Nature Methods 9, p117-118.

PDF

Watanabe, S., C. Ebeling, G. Oikonomou, S. Shaham, J. Gerton and E.M. Jorgensen. 2011. Three-Dimensional Reconstruction of Actin in a Sensory Glial Cell using Bi-Plane PALM. Microscopy and Microanalysis 17 (Suppl. 2) , p16-17. doi:10.1017/S143192761100095X.

PDF

Oikonomou, G., E.A. Perens, Y. Lu, S. Watanabe, E.M. Jorgensen and S. Shaham. 2011. Opposing activities of LIT-1/NLK and DAF-6/Patched-related direct sensory compartment morphogenesis in C. elegans. PLoS Biology 9, e1001121.

PDF

Phirke, Prasad, E. Efimenko, S. Mohan, J. Burghoorn, F. Crona, M.W. Bakhoum, M. Trieb, K. Schuske, E. M. Jorgensen, B. P Piasecki, M. R Leroux, and P. Swoboda. 2011. Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport. Dev Biol. 357, p235-247.

PDF

Frøkjær-Jensen, C., M.W. Davis, M. Ailion, E.M. Jorgensen. 2012. Improved Mos1-mediated transgenesis in C. elegans. Nature Methods 9, 117-118.

PDF

Oikonomou G, Perens EA, Lu Y, Watanabe S, Jorgensen EM, Shaham S. Opposing Activities of LIT-1/NLK and DAF-6/Patched-Related Direct Sensory Compartment Morphogenesis in C. elegans.PLoS Biol. 2011 Aug;9(8):e1001121.

PDF

Phirke P, Efimenko E, Mohan S, Burghoorn J, Crona F, Bakhoum MW, Trieb M, Schuske K, Jorgensen EM, Piasecki BP, Leroux MR, Swoboda P. Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport. Dev Biol. 2011 Sep 1;357(1):235-47.

PDF

Batchelder EL, Hollopeter G, Campillo C, Mezanges X, Jorgensen EM, Nassoy P, Sens P, Plastino J. Membrane tension regulates motility by controlling lamellipodium organization. Proc Natl Acad Sci U S A. 2011 Jul 12

PDF

Zhang H, Constantine R, Vorobiev S, Chen Y, Seetharaman J, Huang YJ, Xiao R, Montelione GT, Gerstner CD, Davis MW, Inana G, Whitby FG, Jorgensen EM, Hill CP, Tong L, Baehr W. UNC119 is required for G protein trafficking in sensory neurons. Nat Neurosci. 2011 Jun 5

PDF

Zeiser E, Frøkjær-Jensen C, Jorgensen E, Ahringer J. MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline. PLoS One. 2011;6(5):e20082.

PDF

Park M, Watanabe S, Poon VY, Ou CY, Jorgensen EM, Shen K. CYY-1/cyclin Y and CDK-5 differentially regulate synapse elimination and formation for rewiring neural circuits. Neuron. 2011 May 26

PDF

Hobson RJ, Liu Q, Watanabe S, Jorgensen EM. Complexin maintains vesicles in the primed state in C. elegans. Curr Biol. 2011 Jan 25;21(2):106-13.

PDF

Watanabe S., A. Punge , G. Hollopeter , K.I. Willig, R.J. Hobson , M.W. Davis , S.W. Hell , and E.M. Jorgensen. 2011. Protein localization in electron micrographs using fluorescence nanoscopy. Nature Methods 8, p80-84.

PDF

Rathore S.S., E.G. Bend, H. Yu, M. Hammarlund, E.M. Jorgensen and J. Shen. 2010. Syntaxin N-peptide motif is an initiation factor for the assembly of the SNARE-Sec1/Mun18 membrane fusion complex. Proc. Natl. Acad. Sci. 107, p22399-22406.

PDF

Jurrus, E., A.R. Paiva, S. Watanabe, J.R. Anderson, B.W. Jones, R.T. Whitaker, E.M. Jorgensen, R.E. Marc, and T Tasdizen. 2010. Detection of neuron membranes in electron microscopy images using serial neural network architecture. Medical Image Analysis 14, 770-783.

PDF

Frøkjær-Jensen, C., M.W. Davis, G. Hollopeter, J. Taylor, T. Harris, P. Nix, R. Lofgren, M. Bastiani, D.G. Moerman, E.M. Jorgensen. 2010. Targeted gene deletions in C. elegans. Nature Methods 7:451-453.

PDF

Ou, C.Y., V.Y. Poon, C. Maeder, S. Watanabe, E. Lehrman, A.K.Y. Fu, M. Park, W.Y. Fu, E.M. Jorgensen, N.Y. Ip, and K. Shen. 2010. Two cyclin-dependent kinase pathways are essential for polarized trafficking of presynaptic components. Cell141:846-858.

PDF

Jospin, M., Y.B. Qi, T. Stawicki, T. Boulin, K.R. Schuske, H.R. Horvitz, J.L. Bessereau, E.M. Jorgensen and Y. Jin. 2009. A neuronal acetylcholine receptor regulates the balance of muscle excitation and inhibition in C. elegans. PLoS Biology 7, e1000265.

PDF

Frøkjær-Jensen, C., M.W. and E.M. Jorgensen. 2009. Calcium: an insignificant thing.  Nature Neuroscience 12, 1213-1214. Review.

PDF

Liu, Q., G. Hollopeter and E.M. Jorgensen. 2009. Graded synaptic transmission at the Caenorhabditis elegans neuromuscular junction. Proc Natl Acad Sci. 106(26):10823-3.

PDF

Sato K., Ernstrom G.G., Watanabe S., Weimer R.M., Chen C.H., Sato M., Siddiqui A., Jorgensen E.M., Grant B.D. 2009. Differential requirements for clathrin in receptor-mediated endocytosis and maintenance of synaptic vesicle pools. Proc Natl Acad Sci USA 106:1139-1144..

PDF

Gu, M., K. Schuske, S.i Watanabe, Q. Liu, P. Baum, G. Garriga, and E.M. Jorgensen. 2008. mu2 adaptin facilitates but is not essential for synaptic vesicle recycling in Caenorhabditis elegansJ. Cell Biol. 183, 881-892.

PDF

Frøkjær-Jensen, C., M.W. Davis, C.E. Hopkins, B. Newmann, J.M. Thummel, S-P. Olesen, M. Grunnet and E.M. Jorgensen. 2008. Single copy insertion of transgenes in C. elegans. Nature Genetics 40, 1375-1383.

PDF

Hammarlund, M., P. Nix, L. Hauth, E.M. Jorgensen, and M..J. Bastiani. 2009. Axon regeneration requires a conserved MAP kinase pathway. Science 323, 802-806.

PDF

Palfreyman, M., and E.M. Jorgensen. 2009. In vivo analysis of membrane fusion. In Encyclopedia of Life Sciences, John Wiley & Sons. Chichester http://www.els.net/ [DOI: 10.1002/ 9780470015902.a0020891]. Review.

PDF

Palfreyman, M., and E.M. Jorgensen. 2008. Roles of SNARE proteins in synaptic vesicle fusion. In Molecular Mechanisms of Neurotransmitter Release, Humana Press, p35-59. Review

PDF

Davis, M.W., J. Morton, D. Carroll and E.M. Jorgensen. 2008. Gene activation using FLP recombinase in C. elegans. PLoS Genetics 4(3) e1000028.

PDF

Robert, V.J., M.W. Davis, E.M. Jorgensen and J-L Bessereau. Gene conversion and end-joining repair double-strand breaks in the C. elegans germline. Genetics 180, 673 - 679.

PDF

Hammarlund, M., S. Watanabe, K. Schuske, and E.M. Jorgensen. 2008. CAPS and syntaxin dock dense core vesicles to the plasma membrane in neurons. Journal of Cell Biology 180 483-491.

PDF

Pan, C.L, P. Baum, M. Gu, E. M. Jorgensen, S. Clark, and G. Garriga. 2008. C. elegans AP-2 and retromer control Wnt secretion by regulating MIG-14/Wntless.  Developmental Cell 14, 132-139.

PDF

Jung, N.,  M. Wienisch, M. Gu, J.B. Rand, S. L Müller, G. Krause, E. M. Jorgensen, J. Klingauf, V. Haucke. 2007. Molecular basis of synaptic vesicle cargo recognition by the endocytic sorting adaptor stonin 2. Journal of Cell Biology 179, 1497-1510.

PDF

Beg, A., P., G. Ernstrom, P. Nix, M.W. Davis and E.M. Jorgensen. 2008. Protons act as a transmitter for muscle contraction in C. elegansCell 132: 149-160.

PDF

Williams, S.L., S. Lutz, N.K. Charlie, C. Vettel, M. Ailion, C.Coco, J.J.G. Tesmer, E.M. Jorgensen, T. Wieland, and K.G. Miller.  2007.  Trio's Rho-specific GEF domain is the missing Gq effector in C. elegansGenes and Development 21, 2731-2746.

PDF

White, J.Q., T.J. Nicholas, J. Gritton, L. Truong, E.R. Davidson and E.M. Jorgensen. 2007. The sensory circuitry for sexual attraction in C. elegans males. Current Biology 17, 1847-1857.

PDF

Peters, M. T. Teramoto, J.Q. White, K. Iwasaki and E. M. Jorgensen. A calcium wave mediated by gap junctions coordinates a rhythmic behavior in C. elegans.  2007. Current Biology 17, 1601-1608.

PDF

Jospin, M., S. Watanabe, D. Joshi, S. Young, K. Hamming, C. Thacker, T. Snutch, E.M. Jorgensen and K. Schuske. 2007. UNC-80 and the NCA ion channels contribute to endocytosis defects in synaptojanin mutants. Current Biology 17, 1595-1600.

PDF

Hammarlund, M., M. Palfreyman, S. Watanabe, S. Olsen, and E.M. Jorgensen. 2007. Open syntaxin docks synaptic vesicles. PLoS Biology 5 (8): e198, 1695-1711.

PDF

Schuske, K. M.T. Palfreyman, S. Watanabe, and E. M. Jorgensen. 2007. UNC-46, a novel protein required for trafficking of the vesicular GABA transporter. Nature Neuroscience 10, 846-853.

PDF

Palfreyman, M., and E.M. Jorgensen. 2007. PKC defends crown against Munc13. Neuron 54, 179-180. Review.

PDF

Speese, S., M. Petrie, K. Schuske, M. Ailion, K. Ann, K. Iwasaki, E.M. Jorgensen, and T.F.J. Martin. 2007. UNC-31 (CAPS) Is Required for Dense-Core Vesicle But Not Synaptic Vesicle Exocytosis in Caenorhabditis elegansJournal of Neuroscience 27, 6150-6162.

PDF

Bednarek, E., L. Schaheen, J. Gaubatz, E.M. Jorgensen and H. Fares. 2007. The plasma membrane calcium-ATPase is required for clathrin-mediated endocytosis. Traffic 8, 543-553.

PDF

Hammarlund, M., E.M. Jorgensen, M.J. Bastiani. 2007. Axons break in animals lacking beta-spectrin. J Cell Biol. 176, 269-275.

PDF

Morton, J., M.W. Davis, E.M. Jorgensen, and D. Carroll. 2006. Induction and repair of zinc-finger nuclease-targeted double-strand breaks in C. elegans somatic cells. Proc Natl Acad Sci USA 103, 16370-16375.

PDF

Abraham, C., H. Hutter, M.T. Palfreyman, G. Spatkowski, R. Weimer, R. Windoffer, E.M. Jorgensen and R. Leube. 2006. Synaptic tetraspan vesicle membrane proteins are conserved but not needed for synaptogenesis and neuronal function in C. elegansProc Natl Acad Sci USA 103, 8227-8232.

PDF

Wardell, B., P.S. Marik, D. Piper, T. Rutar, E.M. Jorgensen and B.A. Bamber. 2006.  Residues in the first transmembrane domain of the Caenorhabditis elegans GABAA receptor confer sensitivity to the neurosteroid pregnenolone sulfate.  Brit. J. Pharm.  148, 162-172.

PDF

Davis*, M.W., M. Hammarlund*, T. Harrach, S. Olsen, and E.M. Jorgensen. 2005. Rapid single nucleotide polymorphism mapping in C. elegans.  BMC genomics 6, 118.

PDF

Hammarlund, M.*, M.W. Davis*, H. Nguyen, D. Dayton, and E.M. Jorgensen. 2005. Heterozygous insertions alter crossover distribution but allow crossover interference in C. elegans.  Genetics, 171: 1047-1056. Supplementary Data

  • Commentary: Hawley, R. S. (2005). Faculty of 1000. PDF

PDF

Williams, D.C., T. Boulin, A.F. Ruaud, E.M. Jorgensen, and J.L Bessereau. 2005. Characterization of Mos1-Mediated Mutagenesis in Caenorhabditis elegans: A Method for the Rapid Identification of Mutated Genes.  Genetics, 169: 1779-1785.

PDF

Bamber, B.A., J.E. Richmond, J.F. Otto and E.M. Jorgensen. 2005.  The composition of the GABA receptor at the Caenorhabditis elegans neuromuscular junction.  Br. J. Pharm. 144, 502 - 509.

PDF

Davis, M.W., A.J. Birnie, A.C. Chan, A.P. Page, and E.M. Jorgensen. 2004. A conserved metalloprotease mediates ecdysis in C. elegans.  Development 131, 6001-6008.

PDF

Jorgensen, E.M. 2004. Dopamine: should I stay or should I go now?  Nature Neuroscience 7, 1019-1021. Review.

PDF

Schuske, K., and E.M. Jorgensen, 2004. The vesicular glutamate transporter: shooting blanks.  Science 304, 1750-1752. Review.

PDF

Schuske, K., A. Beg, and E.M. Jorgensen, 2004. The GABA nervous system in Caenorhabditis elegans.  Trends in Neurosci. 27, p407-414. Review.

PDF

Rostaing, P., R.M. Weimer, E.M. Jorgensen, A. Triller and J.L Bessereau. 2004. Preservation of immunoreactivity and fine structure of C. eleganstissues using high-pressure freezing.  J. Histochemistry and Cytochemistry 52: 1–12.

PDF

Schuske, K.R., J.E. Richmond, D.S. Matthies, W.S. Davis, S. Runz, D.A. Rube, A.M. van der Bliek and E.M. Jorgensen. 2003. Endophilin is required for synaptic vesicle endocytosis by localizing synaptojanin.  Neuron 40, 749-762.

  • Commentary: Endophilin and synaptojanin hook up to promote synaptic vesicle endocytosis.  Song and K. Zinsmaier.  2003.  Neuron 40, 665-670. PDF

PDF

Beg, A., and E.M. Jorgensen. 2003. An excitatory GABA receptor. Nature Neuroscience 6, 1145-1152.

  • Commentary: Jones. 2003. An exciting GABA receptor. Nature Reviews Neuroscience PDF

  • Commentary: Goaillard, J-M., and E. Marder.  2003. Exciting guts with GABA. Nature Neuroscience 6, 1121-1122. PDF

PDF

Lesa, G., M. Palfreyman, D. H. Hall, M. T. Clandinin, C. Rudolph, E.M. Jorgensen and G. Schiavo. 2003. Long chain polyunsaturated fatty acids are required for efficient neurotransmission in C. elegans.  J. Cell Science 116, 4965-4975.

PDF

Weimer, R., J.E. Richmond, W.S. Davis, J. Gritton, G. Hadwiger, M. Nonet and E.M. Jorgensen. 2003. Defects in synaptic vesicle docking in unc-18 mutants. Nature Neuroscience 6, 1023-1030.

PDF

Weimer, R., and E.M. Jorgensen. 2003. Controversies in synaptic vesicle exocytosis.  J. Cell Sci. 116, 3661-3666.   Review. 

PDF

Bamber, B.A.; R.E. Twyman, and E.M. Jorgensen. 2003. Pharmacological characterization of the homomeric and heteromeric UNC-49 GABA receptors in C. elegans  British Journal Pharmacology, 138, 883-893.

PDF

Corsi A.K. T.M., Brodigan, E.M. Jorgensen, M. Krause. 2002. Characterization of a dominant negative C. elegans Twist mutant protein with implications for human Saethre-Chotzen syndrome. Development 129: 2761-2772.

PDF

Jorgensen, E.M., and S.E. Mango. 2002. The art and design of genetic screens: Caenorhabditis elegansNature Review Genetics 3, 356-369.

PDF

Halevi, S., J. McKay, M. Palfreyman, L. Yassin, M. Eshel, E. Jorgensen, and M. Treinin. 2002. The C. elegans ric-3 gene is required for maturation of nicotinic acetylcholine receptors.  EMBO J. 21, 1012-1020.

PDF

Knobel, K., W. Davis and E.M. Jorgensen, and M. Bastiani. 2001. UNC-119 suppresses axon branching in C. elegans Development  128: 4079-4092.

PDF

Koushika, S., J. E. Richmond, G. Hadwiger, R. Weimer, E. M. Jorgensen and M. L. Nonet. 2001. A post-docking role for active zone protein Rim.  Nature Neuroscience 4, 997-1005.

PDF

Bessereau, J.L., A. Wright, D.C. Williams, K. Schuske, M.W. Davis and E.M. Jorgensen.  2001. Mobilization of a Drosophila transposon in the Caenorhabditis elegans germ line. Nature 413, 70-74.

PDF

Harris, T.W., K. Schuske, and E.M. Jorgensen. 2001. Synaptic vesicle endocytosis in C. elegansTraffic 2, 597-605.  Review.

PDF

Richmond, J.E., R.M. Weimer, and E.M. Jorgensen. 2001. An open form of syntaxin bypasses the requirement for UNC-13 in vesicle priming.  Nature 412, 338-341.

PDF

Yook, K.J., S.R. Proulx and E.M. Jorgensen. 2001. Rules of nonallelic noncomplementation at the synapse in Caenorhabditis elegans.  Genetics 158, 209-220.

PDF

Harris, T.W., E. Hartwieg, H.R. Horvitz, and E.M. Jorgensen. 2000. Mutations in synaptojanin disrupt vesicle recycling. J Cell Biol 150, 589-600.

PDF

Hammarlund, M., W.S. Davis and E.M. Jorgensen. 2000. Mutations in b-spectrin disrupt axon outgrowth and sarcomere structure.  J. Cell Biol. 149, 931-942.

  • Commentary: A protein accumulator.  Pinder, J.C. and A.J. Baines.  2000. Nature 406, 253-254. PDF

PDF

 Richmond, J.E., W.S. Davis, and E.M. Jorgensen. 1999. UNC-13 is required for synaptic vesicle fusion in C. elegans.  Nature Neuroscience 2, 959-964.

PDF

Dal Santo, P., M.A. Logan, A.D. Chisholm and E.M. Jorgensen. 1999.The inositol trisphosphate receptor regulates a 50 second behavioral rhythm in C. elegans.  Cell 98, 757-767.

PDF

Knobel, K., E.M. Jorgensen and M. Bastiani. 1999. Growth cones stall and collapse during C. elegans development. Development 126, 4489-4498.

PDF

Richmond, J.E., and E.M. Jorgensen. 1999. One GABA and two acetylcholine receptors function at the C. elegans neuromuscular junction. Nature Neuroscience 2, 791-797.

PDF

Nonet, M., A.M. Holgado, F. Brewer, C.J. Serpe, B.A. Norbeck, J. Holleran, L. Wei, E. Hartweig, E.M. Jorgensen, and A. Alfonso. 1999. UNC-11, a Caenorhabditis elegans AP180 homologue, regulates the size and protein composition of synaptic vesicles. Mol. Biol. Cell 10, 2343-2360.

PDF

Bamber, B., Beg, A., Twyman, R. and E.M. Jorgensen. 1999. The Caenorhabditis elegans unc-49 locus encodes multiple subunits of a heteromultimeric GABA receptor  J. Neuroscience 19, 5348-5359.

PDF

Jin, Y., Jorgensen, E., Hartwieg, E. and H.R. Horvitz. 1999. The C. elegans gene unc-25 encodes glutamic acid decarboxylase and is required for synaptic transmission but not synaptic development. J. Neuroscience 19, 539-548.

PDF

Chalfie, M., Jorgensen, E.M.. 1998. C. elegans neuroscience: Genetics to genome. Trends Genet. 14:506-512.

PDF

Gilbert, S.F., and E.M. Jorgensen. 1998. Wormwholes: a commentary on K.F. Schaffner's 'Genes, behavior and developmental emergentism'. Philosophy of Science 65, 259-266.

PDF

McIntire, S.L., R.J. Reimer, K. Schuske, R.H. Edwards and E.M. Jorgensen. 1997. Identification and characterization of the vesicular GABA transporter. Nature 389, 870-876.

PDF

Nonet, M.L., J.E. Staunton, M. Kilgard, E. Hartwieg, T. Fergestad, H.R. Horvitz, E.M. Jorgensen, B.J. Meyer. 1997. C. elegans rab-3 mutant synapses exhibit impaired function and are partially depleted of vesicles. J. Neurosci. 17: 8061-8073.

PDF

Jorgensen, E.M., Hartwieg, E., Yook, K., and Horvitz, H.R. 1996. Genetic screens for synaptic function mutants in the nematode C. elegans.  In Basic Neuroscience in Invertebrates. Tenth Tokyo Metropolitan Institute for Neuroscience International Symposium. p. 217-226.

 

Jorgensen, E.M, E. Hartwieg, K. Schuske, M.L. Nonet, Y. Jin and H.R. Horvitz. 1995. Defective recycling of synaptic vesicles in synaptotagmin mutants of Caenorhabditis elegansNature 378: 196-199.

PDF

Jorgensen, E.M. and M. Nonet.  1995.  The C. elegans neuromuscular junction.  Seminars in Developmental Biology  6, 207-220.

PDF

McIntire, S., E.M. Jorgensen, and H.R. Horvitz. 1993. Genes required for GABA function in the nematode Caenorhabditis elegansNature 364: 334-337.

PDF

McIntire, S., E.M. Jorgensen, J. Kaplan and H.R. Horvitz. 1993. The GABAergic nervous system of Caenorhabditis elegansNature 364: 337-341.

PDF

Riley, G.R., E.M. Jorgensen, R.K. Baker, and R. Garber. 1991. Positive and negative control of the Antennapedia promoter P2.  Development Sup. 1: 177-185.

Jorgensen, E.M., and R. Garber. 1987. Function and misfunction of the two promoters of the Antennapedia gene in DrosophilaGenes and Development 1: 544-555.

Stroeher, V., E.M. Jorgensen, and R. Garber. 1986. Multiple transcripts from the Antennapedia gene of Drosophila melanogasterMol. Cell. Biol. 6: 4667-4675.

 

book chapters


Hobson, R.J., K. J. Yook and E. M. Jorgensen. 2017. Genetics of Neurotransmitter Release in Caenorhabditis elegans. In Reference Module in Life Sciences, Elsevier, ISBN: 978-0-12-809633-8.

PDF

Watanabe, S., M. Lehmann, E. Hujber, R.D. Fetter, J. Richards, B. Söhl-Kielczynski, A. Felies, C. Rosenmund, J. Schmoranzer, and E.M. Jorgensen. 2014. Nanometer-resolution fluorescence electron microscopy (nano-fEM) in cultured cells. In Methods in Molecular Biology: Electron Microscopy, Ed. J. Kuo, 1117: 503-526.

PDF

LaBella, M.L., S. Sigrist, and E.M. Jorgensen. 2013. Putting genetics into optogenetics: knocking out proteins with light. In Optogenetics. Ed. Hegemann and Sigrist. Dahlem proceedings, De Guyer Publications. p 79-90. Review.

PDF

Hobson, R.J., K. Yook and E.M. Jorgensen. 2013. Neurogenetics of Neurotransmitter Release in Caenorhabditis elegans neurotransmitter release. In Brenner’s Encyclopedia of Genetics, 2nd Edition, Ed. S. Maloy, K. Hughes, Elsevier Science, San Diego, pp. 46-51.

PDF

Watanabe, S., and E.M. Jorgensen. 2012. Visualizing proteins in electron micrographs at nanometer resolution. In Correlative Light and Electron Microscopy, Ed. T. Müller-Reichert and P. Verkade. Methods in Cell Biology 111, p283-306.

PDF

Jorgensen, E.M.  2005.  GABA. WormBook, ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.14.1, http://www.wormbook.org.  Book Chapter.

PDF

Yook, K. and E.M. Jorgensen. 2000. Genetics of the Caenorhabditis elegans nervous system.  In Encyclopedia of Genetics.  Ed. S. Brenner, J. Miller, Academic Press, New York. pp. 1309-1314.

PDF

Jorgensen, E.M., and C. Rankin. 1997. Neural Plasticity.  In:C. elegans II.  Ed. D. Riddle, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.  pp. 769-790.